Chapter 22 Applying Management Procedures
The runMP function can be used to apply a MP to a Data object. For example, to apply the AvC method:
## TAC
## AvC 24.33The runMP prints out the MP recommendations to the console. In the case of a TAC, where multiple repititions where (see reps = 1000 above) used the runMP function prints the median TAC recommendation.
Although it only displays a summary, runMP invisibly returns the Data object with the TAC slot populated:
## TAC
## AvC 24.76
runMP can be used to run several MPs:
## TAC LR5 LFR
## AvC 24.54
## AvC_MLL 23.88 90.25 95Or all available MPs:
## running all available MPs## Warning in rlnorm(reps, mconv(mu, mu * cv), sdconv(mu, mu * cv)): NAs produced
## Warning in rlnorm(reps, mconv(mu, mu * cv), sdconv(mu, mu * cv)): NAs produced
## Warning in rlnorm(reps, mconv(mu, mu * cv), sdconv(mu, mu * cv)): NAs produced
## Warning in rlnorm(reps, mconv(mu, mu * cv), sdconv(mu, mu * cv)): NAs produced
## Warning in rlnorm(reps, mconv(mu, mu * cv), sdconv(mu, mu * cv)): NAs produced
## Warning in rlnorm(reps, mconv(mu, mu * cv), sdconv(mu, mu * cv)): NAs produced
## Warning in rlnorm(reps, mconv(mu, mu * cv), sdconv(mu, mu * cv)): NAs produced
## Warning in rlnorm(reps, mconv(mu, mu * cv), sdconv(mu, mu * cv)): NAs produced
## Warning in rlnorm(reps, mconv(mu, mu * cv), sdconv(mu, mu * cv)): NAs produced
## Warning in rlnorm(reps, mconv(mu, mu * cv), sdconv(mu, mu * cv)): NAs produced
## Warning in rlnorm(reps, mconv(mu, mu * cv), sdconv(mu, mu * cv)): NAs produced
## Warning in rlnorm(reps, mconv(mu, mu * cv), sdconv(mu, mu * cv)): NAs produced## Method CC1 produced greater than 50% NA values## Warning in rlnorm(reps, mconv(mu, mu * cv), sdconv(mu, mu * cv)): NAs produced## Method CC2 produced greater than 50% NA values## Warning in rlnorm(reps, mconv(mu, mu * cv), sdconv(mu, mu * cv)): NAs produced## Method CC3 produced greater than 50% NA values## Warning in rlnorm(reps, mconv(mu, mu * cv), sdconv(mu, mu * cv)): NAs produced## Method CC4 produced greater than 50% NA values## Warning in rlnorm(reps, mconv(mu, mu * cv), sdconv(mu, mu * cv)): NAs produced## Method CC5 produced greater than 50% NA values## Warning in rlnorm(reps, mconv(mu, mu * cv), sdconv(mu, mu * cv)): NAs produced## Method CurC produced greater than 50% NA values## Warning in rlnorm(reps, mconv(mu, mu * cv), sdconv(mu, mu * cv)): NAs produced## Method Islope1 produced greater than 50% NA values## Warning in rlnorm(reps, mconv(mu, mu * cv), sdconv(mu, mu * cv)): NAs produced## Method Islope2 produced greater than 50% NA values## Warning in rlnorm(reps, mconv(mu, mu * cv), sdconv(mu, mu * cv)): NAs produced## Method Islope3 produced greater than 50% NA values## Warning in rlnorm(reps, mconv(mu, mu * cv), sdconv(mu, mu * cv)): NAs produced## Method Islope4 produced greater than 50% NA values## Method Rcontrol produced greater than 50% NA values## Warning in rlnorm(reps, mconv(mu, mu * cv), sdconv(mu, mu * cv)): NAs produced## Method SBT1 produced greater than 50% NA values## TAC Effort LR5 LFR HS Area 1 Area 2
## AvC 24.70
## AvC_MLL 24.44 90.25 95.00
## BK 11.13
## CC1 23.74
## CC2 20.48
## CC3 18.82
## CC4 16.50
## CC5 14.09
## CurC 18.28
## curE 1.00
## curE75 0.75
## DAAC 2.87
## DBSRA 6.22
## DBSRA_40 9.83
## DBSRA4010 3.97
## DCAC 5.70
## DCAC_40 7.16
## DCAC4010 1.48
## DCACs 5.81
## DD 1.99
## DD4010 0.45
## DDe 0.09
## DDe75 0.07
## DDes 0.90
## DepF 2.88
## DTe40 0.90
## DTe50 0.90
## DynF 4.92
## Fadapt 8.13
## Fdem 4.70
## Fratio 3.70
## Fratio4010 2.24
## GB_slope 15.14
## Gcontrol 6.53
## HDAAC 2.86
## ICI 13.75
## ICI2 13.98
## Iratio 10.24
## Islope1 16.90
## Islope2 15.22
## Islope3 12.47
## Islope4 13.23
## Itarget1 7.10
## Itarget1_MPA 7.03 0 1
## Itarget2 7.08
## Itarget3 7.09
## Itarget4 4.94
## ItargetE1 0.85
## ItargetE2 0.85
## ItargetE3 0.85
## ItargetE4 0.85
## matlenlim 90.25 95.00
## matlenlim2 99.28 104.50
## MCD 14.29
## MCD4010 8.88
## minlenLopt1 89.75 99.72
## MRnoreal 0 1
## MRreal 0 1
## NFref 0.01
## Rcontrol 6.53
## Rcontrol2 6.53
## SBT1 14.16
## slotlim 99.28 104.50 142.55
## SPmod 15.90
## SPMSY 12.04
## SPslope 13.85
## SPSRA 5.75
## YPR 8.09
## avgMP 8.62
## TCPUE_e 0.95
## THC 42.98The TAC recommendations from each Output control can be plotted:
## MP Median SD Units
## 1 DD4010 0.45 0.28 thousand tonnes
## 2 DCAC4010 1.48 1.01 thousand tonnes
## 3 DD 1.99 0.85 thousand tonnes
## 4 Fratio4010 2.24 2.08 thousand tonnes
## 5 HDAAC 2.86 1.30 thousand tonnes
## 6 DAAC 2.87 1.31 thousand tonnes
## 7 DepF 2.88 2.09 thousand tonnes
## 8 Fratio 3.70 2.27 thousand tonnes
## 9 DBSRA4010 3.97 5.27 thousand tonnes
## 10 Fdem 4.70 1.83 thousand tonnes
## 11 DynF 4.92 2.14 thousand tonnes
## 12 Itarget4 4.94 0.46 thousand tonnes
## 13 DCAC 5.70 1.86 thousand tonnes
## 14 SPSRA 5.75 3.37 thousand tonnes
## 15 DCACs 5.81 1.84 thousand tonnes
## 16 DBSRA 6.22 4.42 thousand tonnes
## 17 Gcontrol 6.53 0.04 thousand tonnes
## 18 Rcontrol 6.53 0.00 thousand tonnes
## 19 Rcontrol2 6.53 0.00 thousand tonnes
## 20 Itarget1_MPA 7.03 0.62 thousand tonnes
## 21 Itarget2 7.08 0.65 thousand tonnes
## 22 Itarget3 7.09 0.63 thousand tonnes
## 23 Itarget1 7.10 0.64 thousand tonnes
## 24 DCAC_40 7.16 2.07 thousand tonnes
## 25 YPR 8.09 3.59 thousand tonnes
## 26 Fadapt 8.13 0.05 thousand tonnes
## 27 avgMP 8.62 1.94 thousand tonnes
## 28 MCD4010 8.88 8.07 thousand tonnes
## 29 DBSRA_40 9.83 3.00 thousand tonnes
## 30 Iratio 10.24 4.14 thousand tonnes
## 31 BK 11.13 4.16 thousand tonnes
## 32 SPMSY 12.04 7.96 thousand tonnes
## 33 Islope3 12.47 1.21 thousand tonnes
## 34 Islope4 13.23 1.15 thousand tonnes
## 35 ICI 13.75 2.79 thousand tonnes
## 36 SPslope 13.85 1.46 thousand tonnes
## 37 ICI2 13.98 2.89 thousand tonnes
## 38 CC5 14.09 1.32 thousand tonnes
## 39 SBT1 14.16 3.29 thousand tonnes
## 40 MCD 14.29 6.23 thousand tonnes
## 41 GB_slope 15.14 1.52 thousand tonnes
## 42 Islope2 15.22 1.45 thousand tonnes
## 43 SPmod 15.90 3.57 thousand tonnes
## 44 CC4 16.50 1.39 thousand tonnes
## 45 Islope1 16.90 1.37 thousand tonnes
## 46 CurC 18.28 3.88 thousand tonnes
## 47 CC3 18.82 1.41 thousand tonnes
## 48 CC2 20.48 1.94 thousand tonnes
## 49 CC1 23.74 2.07 thousand tonnes
## 50 AvC_MLL 24.44 5.01 thousand tonnes
## 51 AvC 24.70 5.10 thousand tonnes
## 52 THC 42.98 4.33 thousand tonnes